STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_14780Hypothetical protein; COG3839 ABC-type sugar transport systems, ATPase components. (991 aa)    
Predicted Functional Partners:
RAM_07485
Hypothetical protein.
  
     0.652
RAM_07495
Von Willebrand factor type A; COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain.
  
     0.650
RAM_01000
Hypothetical protein.
  
     0.633
RAM_23750
Aminoglycoside O-phosphotransferase; COG3570 Streptomycin 6-kinase.
  
     0.610
RAM_17065
Hypothetical protein.
  
     0.585
RAM_07500
Hypothetical protein.
  
     0.568
RAM_42180
Integral membrane protein.
  
     0.545
RAM_14785
Hypothetical protein.
       0.508
RAM_44600
HD superfamily hydrolase.
  
     0.494
RAM_02080
Hypothetical protein.
  
     0.468
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.