STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_14785Hypothetical protein. (245 aa)    
Predicted Functional Partners:
RAM_07015
P-loop containing NTPase.
  
     0.751
RAM_08075
Hypothetical protein; COG2114 Adenylate cyclase, family 3 (some proteins contain HAMP domain).
  
     0.644
RAM_20895
Hypothetical protein.
  
     0.637
RAM_40600
Hypothetical protein.
  
     0.631
RAM_21605
Hypothetical protein.
  
     0.619
RAM_01435
COG3584 Uncharacterized protein conserved in bacteria.
  
     0.577
RAM_17750
LuxR family transcriptional regulator; COG3899 Predicted ATPase.
  
     0.568
RAM_39040
Hypothetical protein.
 
     0.561
RAM_01315
Hypothetical protein.
  
     0.556
RAM_37780
SGNH hydrolase containing a LamG-like domain; COG3209 Rhs family protein.
 
     0.550
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.