STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_14855Hypothetical protein. (1184 aa)    
Predicted Functional Partners:
RAM_19035
Esterase/lipase; COG3509 Poly(3-hydroxybutyrate) depolymerase.
  
     0.649
RAM_36120
Peroxidase; COG2837 Predicted iron-dependent peroxidase.
  
     0.580
RAM_20645
PHB depolymerase family esterase; COG3509 Poly(3-hydroxybutyrate) depolymerase.
  
     0.567
RAM_38340
PHB depolymerase family esterase; COG3509 Poly(3-hydroxybutyrate) depolymerase.
  
     0.566
RAM_14860
Hypothetical protein.
       0.549
RAM_30505
Feruloyl esterase; COG3509 Poly(3-hydroxybutyrate) depolymerase.
  
     0.533
RAM_01045
Aminopeptidase; COG2234 Predicted aminopeptidases.
  
     0.521
RAM_33230
Cell surface-attached carbohydrate-binding protein.
  
     0.506
RAM_17420
Hypothetical protein; COG0480 Translation elongation factors (GTPases).
  
     0.500
nhaA
Na+/H+ antiporter NhaA; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the NhaA Na(+)/H(+) (TC 2.A.33) antiporter family.
  
    0.497
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.