STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_14870COG1309 Transcriptional regulator. (192 aa)    
Predicted Functional Partners:
RAM_14865
Hydrolase/acyltransferase; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
 
     0.763
RAM_16180
Hypothetical protein.
  
     0.659
RAM_44440
alpha-L-fucosidase/alpha-galactosidase.
  
     0.610
RAM_07780
COG3669 Alpha-L-fucosidase.
  
     0.548
RAM_20730
Hyalin.
  
     0.531
RAM_27770
Methyltransferase type 12; COG0500 SAM-dependent methyltransferases.
  
 
   0.524
RAM_02795
Glycosyl transferase; COG0726 Predicted xylanase/chitin deacetylase.
  
     0.510
RAM_14875
Hypothetical protein.
       0.497
RAM_01150
Hypothetical protein.
  
     0.494
RAM_42490
Hypothetical protein.
  
     0.477
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.