STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_14950COG1404 Subtilisin-like serine proteases; Belongs to the peptidase S8 family. (1086 aa)    
Predicted Functional Partners:
RAM_28140
COG3209 Rhs family protein.
 
    0.556
RAM_37485
Rhs family protein; COG5184 Alpha-tubulin suppressor and related RCC1 domain-containing proteins.
 
 
 0.533
RAM_26285
Hypothetical protein.
 
  
 0.520
RAM_23500
COG3979 Uncharacterized protein contain chitin-binding domain type 3.
 
     0.517
RAM_16345
COG0474 Cation transport ATPase.
  
 0.484
RAM_19350
COG3209 Rhs family protein.
 
    0.481
RAM_28145
LamG domain-containing protein; COG3209 Rhs family protein.
 
 
 0.479
RAM_13015
COG5640 Secreted trypsin-like serine protease.
 
 0.466
aspC
aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 2 subfamily.
  
   
 0.449
RAM_10435
COG5640 Secreted trypsin-like serine protease.
 
 0.438
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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