STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_14970COG1309 Transcriptional regulator. (224 aa)    
Predicted Functional Partners:
RAM_22315
COG1309 Transcriptional regulator.
  
     0.655
RAM_26855
COG1309 Transcriptional regulator.
  
     0.653
RAM_33390
COG1309 Transcriptional regulator.
  
     0.651
RAM_28705
COG1309 Transcriptional regulator.
  
     0.639
RAM_37875
COG1309 Transcriptional regulator.
  
     0.591
RAM_14965
COG1309 Transcriptional regulator.
       0.565
RAM_14975
COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.550
RAM_28955
COG1309 Transcriptional regulator.
  
     0.545
RAM_34935
COG1309 Transcriptional regulator.
  
     0.427
MarR-2
COG1846 Transcriptional regulators.
  
    0.400
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.