STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OsmCOsmotically inducible protein OsmC; COG1764 Predicted redox protein, regulator of disulfide bond formation. (144 aa)    
Predicted Functional Partners:
RAM_14985
COG1846 Transcriptional regulators.
  
  
 0.684
Dps
COG0783 DNA-binding ferritin-like protein (oxidative damage protectant); Belongs to the Dps family.
 
  
 0.521
PfpI
ThiJ/PfpI family protein; COG0693 Putative intracellular protease/amidase.
 
  
 0.488
RAM_14990
Hypothetical protein.
       0.469
RpoS
RNA polymerase sigma factor SigB; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
   
  
 0.463
OtsA
COG0380 Trehalose-6-phosphate synthase.
  
    0.453
RAM_20890
Fused protein kinase and phosphatase containing multi-sensor domain; COG2202 FOG: PAS/PAC domain.
  
  
 0.443
RAM_09380
Iron-sulfur cluster biosynthesis protein; Belongs to the HesB/IscA family.
      
 0.433
RAM_32140
Hypothetical protein.
  
  
 0.432
RAM_45890
Cell division FtsK/SpoIIIE; COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins.
      
 0.414
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.