STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_15145Glycosyl hydrolase; COG1554 Trehalose and maltose hydrolases (possible phosphorylases). (799 aa)    
Predicted Functional Partners:
RAM_15150
Hydrolase; COG0637 Predicted phosphatase/phosphohexomutase.
  
 0.997
RAM_13180
Maltooligosyltrehalose trehalohydrolase; COG0296 1,4-alpha-glucan branching enzyme.
 
 
 0.958
RAM_13195
Trehalose synthase; COG0366 Glycosidases.
 
 
 0.956
RAM_22825
COG3321 Polyketide synthase modules and related proteins.
     
  0.800
RAM_22840
Esterase; COG0627 Predicted esterase.
     
  0.800
RAM_15155
COG0640 Predicted transcriptional regulators.
       0.778
RAM_15160
COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism.
       0.535
TreY
COG3280 Maltooligosyl trehalose synthase.
 
   
 0.521
OtsB
Trehalose-phosphatase/glycoside hydrolase; COG1877 Trehalose-6-phosphatase.
  
 
 0.445
OtsA
COG0380 Trehalose-6-phosphate synthase.
     
 0.421
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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