STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_15175Hypothetical protein. (153 aa)    
Predicted Functional Partners:
RAM_15170
COG1846 Transcriptional regulators.
 
     0.833
RAM_42490
Hypothetical protein.
  
     0.718
RAM_04590
Hypothetical protein.
  
     0.675
RAM_00245
Hypothetical protein.
  
     0.574
RAM_46930
ABC transporter permease; COG0577 ABC-type antimicrobial peptide transport system, permease component.
 
     0.565
RAM_20530
ABC transporter permease; COG0577 ABC-type antimicrobial peptide transport system, permease component.
  
     0.486
RAM_15165
COG4922 Uncharacterized protein conserved in bacteria.
       0.474
RAM_00810
Hypothetical protein.
  
     0.412
RAM_38950
COG3469 Chitinase; Belongs to the glycosyl hydrolase 18 family.
  
    0.412
RAM_16500
COG1653 ABC-type sugar transport system, periplasmic component.
  
     0.409
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.