STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_15195Hypothetical protein. (186 aa)    
Predicted Functional Partners:
RAM_15190
Carotenoid cleavage dioxygenase; COG3670 Lignostilbene-alpha,beta-dioxygenase and related enzymes.
 
     0.835
RAM_15200
COG1695 Predicted transcriptional regulators.
 
     0.756
RAM_23170
Hypothetical protein.
  
     0.613
RAM_41845
TlpA-like family protein; COG0526 Thiol-disulfide isomerase and thioredoxins.
 
     0.555
RAM_47115
Hypothetical protein.
  
     0.508
RAM_06085
Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein.
  
     0.495
RAM_09870
COG1309 Transcriptional regulator.
  
     0.465
RAM_41970
Major facilitator transporter; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
  
  
 0.445
RAM_23900
COG1309 Transcriptional regulator.
  
     0.402
RAM_42970
Hypothetical protein.
  
     0.402
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.