STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_15225Hypothetical protein; COG2508 Regulator of polyketide synthase expression. (407 aa)    
Predicted Functional Partners:
RAM_01150
Hypothetical protein.
  
     0.716
RAM_37780
SGNH hydrolase containing a LamG-like domain; COG3209 Rhs family protein.
  
     0.683
RAM_11355
Hypothetical protein.
  
     0.585
RAM_22935
Activating enzyme of the ubiquitin-like protein; COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2.
 
     0.526
RAM_15220
Isoquinoline 1-oxidoreductase alpha subunit; COG2080 Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs.
       0.510
RAM_15215
Isoquinoline 1-oxidoreductase beta subunit; COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs.
       0.499
RAM_11425
Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.
  
     0.481
RAM_14870
COG1309 Transcriptional regulator.
  
     0.461
RAM_05290
COG1396 Predicted transcriptional regulators.
  
    0.459
PcoC-2
Copper resistance protein.
  
     0.453
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.