STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_15290Hypothetical protein. (263 aa)    
Predicted Functional Partners:
RAM_15295
Hypothetical protein.
 
     0.961
RAM_26205
Protein serine phosphatase with GAF(s) sensor(s); COG2208 Serine phosphatase RsbU, regulator of sigma subunit.
  
     0.595
RAM_15300
Hypothetical protein.
       0.563
RAM_05275
COG3227 Zinc metalloprotease (elastase).
  
     0.551
RAM_05285
Zinc metalloprotease; Extracellular zinc metalloprotease.
  
     0.529
CpbD-4
COG3397 Uncharacterized protein conserved in bacteria.
  
     0.522
RAM_22070
Hypothetical protein; COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.
 
     0.505
RAM_04825
Hypothetical protein; COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.
  
     0.489
RAM_18035
COG5516 Conserved protein containing a Zn-ribbon-like motif, possibly RNA-binding.
  
     0.450
FabG-5
3-oxoacyl-[acyl-carrier-protein] reductase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
       0.441
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.