STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_15375Hypothetical protein; COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit. (96 aa)    
Predicted Functional Partners:
RAM_12625
Hypothetical protein.
  
     0.756
RAM_45390
Hypothetical protein; COG0678 Peroxiredoxin.
  
     0.708
RAM_20905
Hypothetical protein.
  
     0.707
RAM_26575
Hypothetical protein.
  
     0.699
RAM_00450
Hypothetical protein.
  
     0.696
RAM_39810
Hypothetical protein.
  
     0.685
RAM_34215
Hypothetical protein.
  
     0.682
RAM_06045
Hypothetical protein.
  
     0.681
RAM_01545
Hypothetical protein.
  
     0.652
RAM_47660
Hypothetical protein.
  
     0.650
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.