STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_15380Hypothetical protein; COG0525 Valyl-tRNA synthetase. (130 aa)    
Predicted Functional Partners:
Atl
endo-beta-N-acetylglucosaminidase; Belongs to the glycosyl hydrolase 18 family.
  
     0.640
RAM_37530
Hypothetical protein.
  
     0.628
RAM_17350
Ricin-type beta-trefoil lectin domain-containing protein.
  
     0.540
RAM_12085
COG1309 Transcriptional regulator.
  
     0.522
RAM_15385
Hypothetical protein.
       0.514
RAM_30400
COG3227 Zinc metalloprotease (elastase).
  
     0.503
RAM_08075
Hypothetical protein; COG2114 Adenylate cyclase, family 3 (some proteins contain HAMP domain).
  
     0.500
RAM_21605
Hypothetical protein.
  
     0.464
RAM_28970
COG1309 Transcriptional regulator.
  
     0.436
RAM_15995
ABC transporter substrate-binding protein; COG1653 ABC-type sugar transport system, periplasmic component.
  
     0.423
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.