STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MarR-4MarR family transcriptional regulator. (146 aa)    
Predicted Functional Partners:
RAM_15395
COG0842 ABC-type multidrug transport system, permease component.
 
     0.823
RAM_15400
COG1131 ABC-type multidrug transport system, ATPase component.
 
     0.821
RAM_15405
COG1131 ABC-type multidrug transport system, ATPase component.
       0.785
RAM_15415
COG0640 Predicted transcriptional regulators.
       0.572
RAM_15390
Penicillin-binding protein; COG0744 Membrane carboxypeptidase (penicillin-binding protein).
       0.533
RAM_15420
COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases.
     
 0.438
RAM_11720
Amidohydrolase; COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold.
  
     0.420
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.