STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_15450COG4585 Signal transduction histidine kinase. (425 aa)    
Predicted Functional Partners:
UvrY
COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
 
 
 0.756
NarL
COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
 
 
 0.722
RAM_00570
COG4585 Signal transduction histidine kinase.
  
     0.709
RAM_42235
COG4585 Signal transduction histidine kinase.
  
     0.680
RAM_27990
COG4585 Signal transduction histidine kinase.
  
     0.663
RAM_18055
COG4585 Signal transduction histidine kinase.
  
     0.659
RAM_47545
COG4585 Signal transduction histidine kinase.
  
     0.652
RAM_04835
COG4585 Signal transduction histidine kinase.
  
     0.650
NarX
Two-component system sensor kinase; COG3850 Signal transduction histidine kinase, nitrate/nitrite-specific.
  
     0.648
RAM_41695
LuxR family transcriptional regulator; COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
 
 
 0.644
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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