STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_15495COG2188 Transcriptional regulators. (258 aa)    
Predicted Functional Partners:
IolB
5-deoxy-glucuronate isomerase; COG3718 Uncharacterized enzyme involved in inositol metabolism.
 
   
 0.701
RAM_09555
Hypothetical protein.
 
     0.700
IolC
5-dehydro-2-deoxygluconokinase; COG0524 Sugar kinases, ribokinase family.
 
   
 0.686
IolE
Inosose dehydratase; COG1082 Sugar phosphate isomerases/epimerases.
 
  
 0.653
PhnF
COG1725 Predicted transcriptional regulators.
  
     0.566
IolE-2
Inosose dehydratase; COG1082 Sugar phosphate isomerases/epimerases.
 
  
 0.562
RAM_46125
COG2188 Transcriptional regulators.
  
     0.559
IolG
Myo-inositol 2-dehydrogenase; COG0673 Predicted dehydrogenases and related proteins.
 
    0.552
RAM_37375
COG2188 Transcriptional regulators.
  
     0.534
IolD
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase; COG3962 Acetolactate synthase; Belongs to the TPP enzyme family.
 
  
 0.532
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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