STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_15505COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases. (382 aa)    
Predicted Functional Partners:
RAM_15500
Hypothetical protein.
 
     0.914
RAM_15570
COG3546 Mn-containing catalase.
 
    0.665
RAM_15515
COG2172 Anti-sigma regulatory factor (Ser/Thr protein kinase).
  
    0.600
RAM_15520
COG2172 Anti-sigma regulatory factor (Ser/Thr protein kinase).
  
    0.600
RAM_15510
COG2208 Serine phosphatase RsbU, regulator of sigma subunit.
       0.596
RAM_15525
COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor).
       0.596
RAM_15530
COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor).
       0.596
RAM_15555
Short-chain dehydrogenase/reductase SDR; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
 
    0.510
RAM_21860
FAD-dependent oxidoreductase; COG0665 Glycine/D-amino acid oxidases (deaminating).
 
  
 0.485
RAM_15535
COG1846 Transcriptional regulators.
       0.447
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.