STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_15570COG3546 Mn-containing catalase. (288 aa)    
Predicted Functional Partners:
RAM_15505
COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases.
 
    0.665
RAM_21860
FAD-dependent oxidoreductase; COG0665 Glycine/D-amino acid oxidases (deaminating).
 
     0.545
RAM_15500
Hypothetical protein.
  
     0.530
RAM_21810
COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases.
 
    0.521
SodA
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
   
  
 0.518
GlgX-3
Glycogen debranching enzyme GlgX; COG1523 Type II secretory pathway, pullulanase PulA and related glycosidases; Belongs to the glycosyl hydrolase 13 family.
  
    0.502
RAM_15575
Hypothetical protein.
       0.490
RAM_16940
ZIP family zinc transporter.
 
   
 0.479
RAM_15555
Short-chain dehydrogenase/reductase SDR; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
  
  
 0.466
RAM_33745
COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases.
 
    0.438
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: medium (54%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.