STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_15605SGNH hydrolase; COG2755 Lysophospholipase L1 and related esterases. (412 aa)    
Predicted Functional Partners:
RAM_15600
Arabinan endo-1,5-alpha-L-arabinosidase.
 
   
 0.699
XynA-3
Endo-1,4-beta-xylanase; COG3693 Beta-1,4-xylanase.
 
 
   0.546
RAM_18715
Hypothetical protein.
  
   0.519
RAM_22975
Hypothetical protein.
  
   0.515
XynA-2
Endo-1,4-beta-xylanase; COG3693 Beta-1,4-xylanase.
 
 
   0.488
XynA-6
Glycosyl hydrolase/beta-1,4-xylanase; COG3509 Poly(3-hydroxybutyrate) depolymerase.
 
 
 
 0.485
AbfA-3
alpha-N-arabinofuranosidase.
 
     0.484
XynA-4
Endo-1,4-beta-xylanase; COG3693 Beta-1,4-xylanase.
 
 
   0.476
AbfA-10
alpha-N-arabinofuranosidase.
  
   
 0.469
RAM_38105
Beta-mannosidase; COG2755 Lysophospholipase L1 and related esterases.
 
 
 0.463
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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