STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_15620ABC transporter substrate-binding protein; COG1653 ABC-type sugar transport system, periplasmic component. (415 aa)    
Predicted Functional Partners:
RAM_15625
COG1175 ABC-type sugar transport systems, permease components.
 
 
 0.977
RAM_15630
COG0395 ABC-type sugar transport system, permease component.
 
   
 0.945
RAM_15635
Hypothetical protein; COG3408 Glycogen debranching enzyme.
 
   
 0.920
RAM_03775
COG3839 ABC-type sugar transport systems, ATPase components; Belongs to the ABC transporter superfamily.
  
 0.896
RAM_05505
COG3839 ABC-type sugar transport systems, ATPase components; Belongs to the ABC transporter superfamily.
  
 0.896
RAM_46025
COG3842 ABC-type spermidine/putrescine transport systems, ATPase components; Belongs to the ABC transporter superfamily.
  
 0.896
RAM_22125
COG1175 ABC-type sugar transport systems, permease components.
 
 
 0.808
LacI-5
COG1609 Transcriptional regulators.
 
  
 0.694
RAM_22120
COG0395 ABC-type sugar transport system, permease component.
 
   
 0.671
RAM_24380
COG1175 ABC-type sugar transport systems, permease components.
 
 
 0.670
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.