STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_15640Hypothetical protein; Belongs to the glycosyl hydrolase 12 (cellulase H) family. (230 aa)    
Predicted Functional Partners:
RAM_18730
Endoglucanase E-like hydrolase; COG2755 Lysophospholipase L1 and related esterases.
 
 
 0.770
RAM_46895
Hypothetical protein; COG2730 Endoglucanase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
   
 0.754
RAM_07120
Carbohydrate-binding protein; COG2730 Endoglucanase.
 
   
 0.748
RAM_40235
Carbohydrate-binding protein.
 
   
 0.709
XynA
Endo-1,4-beta-xylanase; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
 
   
 0.681
Pel-2
Pectate lyase.
 
 
 0.663
RAM_16750
Hypothetical protein.
 
 
 
 0.638
RAM_16735
Lipolytic protein G-D-S-L family; COG2755 Lysophospholipase L1 and related esterases.
 
 
 0.612
RAM_18410
COG3409 Putative peptidoglycan-binding domain-containing protein.
  
    0.586
RAM_26385
Endo-1,4-beta-glucanase; COG5297 Cellobiohydrolase A (1,4-beta-cellobiosidase A).
  
     0.577
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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