STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_15820Xylose isomerase; COG0535 Predicted Fe-S oxidoreductases. (258 aa)    
Predicted Functional Partners:
RAM_29815
Hypothetical protein; COG5635 Predicted NTPase (NACHT family).
  
     0.586
RAM_08530
Oxidoreductase; COG0673 Predicted dehydrogenases and related proteins.
 
  
 0.567
IolD
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase; COG3962 Acetolactate synthase; Belongs to the TPP enzyme family.
  
  
 0.567
RAM_35600
Xylose isomerase; COG1082 Sugar phosphate isomerases/epimerases.
 
     0.532
IolB
5-deoxy-glucuronate isomerase; COG3718 Uncharacterized enzyme involved in inositol metabolism.
  
  
 0.506
RAM_30095
Hypothetical protein; COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily.
  
     0.491
RAM_35595
Hypothetical protein.
 
  
 0.490
RAM_08515
Oxidoreductase; COG0673 Predicted dehydrogenases and related proteins.
 
  
 0.481
Add-3
COG1816 Adenosine deaminase.
  
     0.477
RAM_29970
Oxidoreductase domain-containing protein; COG0673 Predicted dehydrogenases and related proteins.
 
  
 0.471
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.