STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_15840Hypothetical protein; COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold. (268 aa)    
Predicted Functional Partners:
RAM_15855
Hypothetical protein.
 
     0.612
RAM_15845
Hypothetical protein; COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases).
 
     0.610
RAM_18760
Amino acid adenylation domain-containing protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
  
 0.568
RAM_18765
Amino acid adenylation domain-containing protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
  
 0.568
RAM_27510
COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
  
 0.568
RAM_15850
Hypothetical protein.
       0.545
RAM_24550
Hypothetical protein; COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold.
  
     0.523
RAM_31715
COG0259 Pyridoxamine-phosphate oxidase.
  
     0.499
RAM_11175
Integral membrane protein; Part of cytochrome c oxidase, its function is unknown. Belongs to the cytochrome c oxidase bacterial subunit CtaF family.
      
 0.448
RAM_21855
Hypothetical protein.
  
     0.445
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.