STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_15855Hypothetical protein. (298 aa)    
Predicted Functional Partners:
RAM_15845
Hypothetical protein; COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases).
 
     0.961
RAM_15850
Hypothetical protein.
 
    0.951
RAM_15865
Hypothetical protein; COG5637 Predicted integral membrane protein.
 
    0.659
RAM_15840
Hypothetical protein; COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold.
 
     0.611
RAM_26255
Hypothetical protein.
  
     0.608
CysG
uroporphyrin-III C-methyltransferase/precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase; COG1648 Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain).
  
  
 0.600
RAM_26560
Hypothetical protein.
  
     0.574
HemD
uroporphyrin-III C-methyltransferase HemD; COG0007 Uroporphyrinogen-III methylase.
  
  
 0.549
RAM_15860
COG0789 Predicted transcriptional regulators.
       0.489
RAM_26035
COG0025 NhaP-type Na+/H+ and K+/H+ antiporters.
  
  
 0.477
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.