STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_15860COG0789 Predicted transcriptional regulators. (275 aa)    
Predicted Functional Partners:
RAM_15865
Hypothetical protein; COG5637 Predicted integral membrane protein.
 
     0.801
RAM_15845
Hypothetical protein; COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases).
 
     0.549
RAM_15880
Hypothetical protein; COG2129 Predicted phosphoesterases, related to the Icc protein.
 
     0.546
RAM_15870
COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); Belongs to the anti-sigma-factor antagonist family.
       0.539
RAM_15850
Hypothetical protein.
       0.489
RAM_15855
Hypothetical protein.
       0.489
RAM_15875
Hypothetical protein.
       0.474
GlnA4-1
Glutamine synthetase-like protein; COG0174 Glutamine synthetase.
 
 
 0.410
RAM_39530
Hypothetical protein.
  
     0.405
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.