STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_15865Hypothetical protein; COG5637 Predicted integral membrane protein. (154 aa)    
Predicted Functional Partners:
RAM_15860
COG0789 Predicted transcriptional regulators.
 
     0.802
RAM_15875
Hypothetical protein.
 
     0.717
RAM_15850
Hypothetical protein.
 
     0.658
RAM_15855
Hypothetical protein.
 
    0.650
RAM_15845
Hypothetical protein; COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases).
 
     0.621
RAM_15880
Hypothetical protein; COG2129 Predicted phosphoesterases, related to the Icc protein.
 
     0.594
RAM_15870
COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); Belongs to the anti-sigma-factor antagonist family.
       0.539
RAM_30130
Hypothetical protein.
 
     0.538
RAM_00475
COG4549 Uncharacterized protein conserved in bacteria.
  
     0.517
RAM_16590
Hypothetical protein.
 
     0.511
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.