STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_15870COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); Belongs to the anti-sigma-factor antagonist family. (126 aa)    
Predicted Functional Partners:
RAM_30220
Two-component system sensor kinase; COG2202 FOG: PAS/PAC domain.
 
 
 0.853
RAM_20890
Fused protein kinase and phosphatase containing multi-sensor domain; COG2202 FOG: PAS/PAC domain.
 
 
 0.825
RAM_39005
COG2172 Anti-sigma regulatory factor (Ser/Thr protein kinase).
 
 
 0.783
RAM_30215
Anti-sigma regulatory factor, serine/threonine protein kinase; COG3920 Signal transduction histidine kinase.
 
 
 0.765
SpoI-3
Anti-sigma regulatory factor, serine/threonine protein kinase; COG3920 Signal transduction histidine kinase.
 
 
 0.741
RAM_15875
Hypothetical protein.
 
     0.719
RAM_15880
Hypothetical protein; COG2129 Predicted phosphoesterases, related to the Icc protein.
       0.671
RAM_30235
COG2172 Anti-sigma regulatory factor (Ser/Thr protein kinase).
 
 
 0.644
RAM_00965
Hypothetical protein.
  
     0.619
RAM_16600
Anti-anti-sigma factor.
 
 
 0.555
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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