STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Qor-5COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases. (320 aa)    
Predicted Functional Partners:
RAM_07405
COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases.
  
     0.770
RAM_19425
COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases.
  
     0.764
RAM_26390
COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases.
  
     0.709
RAM_15420
COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases.
  
     0.675
RAM_34220
COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases.
  
     0.655
RAM_18760
Amino acid adenylation domain-containing protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
 
 0.592
RAM_18765
Amino acid adenylation domain-containing protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
 
 0.592
RAM_27510
COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
 
 0.592
fabG-2
3-ketoacyl-(acyl-carrier-protein) reductase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
  
   0.550
RAM_15885
SGNH hydrolase; COG2755 Lysophospholipase L1 and related esterases.
       0.537
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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