STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_15925COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II. (203 aa)    
Predicted Functional Partners:
FadD-4
COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
     0.986
RAM_18760
Amino acid adenylation domain-containing protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
 
 0.899
RAM_18765
Amino acid adenylation domain-containing protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
 
 0.839
RAM_27510
COG1020 Non-ribosomal peptide synthetase modules and related proteins.
 
 0.835
BadA-2
benzoate-CoA ligase; COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases.
 
 
 0.809
RAM_15935
Phosphotriesterase PHP; COG1735 Predicted metal-dependent hydrolase with the TIM-barrel fold.
       0.773
FadD-2
COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
  
     0.766
BadA
benzoate-CoA ligase; COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases.
 
 
 0.759
FadD-5
COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
  
     0.757
RAM_36575
fatty-acyl-CoA synthase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
  
     0.750
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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