STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_15970Phosphotransferase; COG3173 Predicted aminoglycoside phosphotransferase. (341 aa)    
Predicted Functional Partners:
Acd-4
COG1960 Acyl-CoA dehydrogenases.
 
 0.995
Acd-12
COG1960 Acyl-CoA dehydrogenases.
 
 0.970
RAM_15960
COG1960 Acyl-CoA dehydrogenases.
 
 
 0.849
RAM_15955
COG1960 Acyl-CoA dehydrogenases.
 
 
 0.837
RAM_36560
COG1960 Acyl-CoA dehydrogenases.
 
 
 0.837
RAM_10920
COG1960 Acyl-CoA dehydrogenases.
 
 
 0.835
RAM_15975
Nodulation protein N; COG2030 Acyl dehydratase.
 
 
 0.805
RAM_19705
Dehydratase; COG2030 Acyl dehydratase.
 
 
 0.640
RAM_15900
Short-chain dehydrogenase/reductase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
 
    0.625
FabG-6
3-oxoacyl-[acyl-carrier-protein] reductase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
 
   0.622
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.