STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_15975Nodulation protein N; COG2030 Acyl dehydratase. (150 aa)    
Predicted Functional Partners:
RAM_17215
COG1960 Acyl-CoA dehydrogenases.
 
 0.954
RAM_17240
COG1960 Acyl-CoA dehydrogenases.
 
 0.947
RAM_17175
Short chain dehydrogenase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 0.946
RAM_19705
Dehydratase; COG2030 Acyl dehydratase.
  
  
 
0.903
FabG-6
3-oxoacyl-[acyl-carrier-protein] reductase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
  
 0.837
Acd-4
COG1960 Acyl-CoA dehydrogenases.
 
 0.815
RAM_15970
Phosphotransferase; COG3173 Predicted aminoglycoside phosphotransferase.
 
 
 0.803
RAM_15960
COG1960 Acyl-CoA dehydrogenases.
 
 0.755
RAM_15955
COG1960 Acyl-CoA dehydrogenases.
 
 0.725
Qor-16
COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases.
 
 0.654
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.