STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_15975Nodulation protein N; COG2030 Acyl dehydratase. (150 aa)    
Predicted Functional Partners:
FabG-6
3-oxoacyl-[acyl-carrier-protein] reductase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
  
 0.830
Acd-4
COG1960 Acyl-CoA dehydrogenases.
 
 0.817
RAM_15970
Phosphotransferase; COG3173 Predicted aminoglycoside phosphotransferase.
 
 
 0.805
RAM_15960
COG1960 Acyl-CoA dehydrogenases.
 
 0.758
RAM_15955
COG1960 Acyl-CoA dehydrogenases.
 
 0.729
Qor-16
COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases.
 
 0.652
RAM_36830
Aminoglycoside phosphotransferase; COG0661 Predicted unusual protein kinase.
 
 
 0.633
RAM_17215
COG1960 Acyl-CoA dehydrogenases.
 
 0.572
RAM_19495
COG1960 Acyl-CoA dehydrogenases.
 
 0.567
RAM_19685
COG1960 Acyl-CoA dehydrogenases.
 
 0.566
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.