STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_15985Mandelate racemase/gluconate dehydratase; COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily. (385 aa)    
Predicted Functional Partners:
DgoA
Galactonate dehydratase; COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily.
 
  
 
0.920
DgoA-2
Galactonate dehydratase; COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily.
 
  
 
0.918
PdhR-6
COG2186 Transcriptional regulators.
 
     0.603
GlpQ-2
COG0584 Glycerophosphoryl diester phosphodiesterase.
     
 0.477
FabG-6
3-oxoacyl-[acyl-carrier-protein] reductase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
       0.462
RAM_15975
Nodulation protein N; COG2030 Acyl dehydratase.
       0.459
RAM_16005
Hypothetical protein; COG0684 Demethylmenaquinone methyltransferase.
 
  
 0.422
RAM_15995
ABC transporter substrate-binding protein; COG1653 ABC-type sugar transport system, periplasmic component.
 
     0.416
RAM_16000
COG1175 ABC-type sugar transport systems, permease components.
 
     0.413
GalM
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
 
     0.400
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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