STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_15995ABC transporter substrate-binding protein; COG1653 ABC-type sugar transport system, periplasmic component. (474 aa)    
Predicted Functional Partners:
RAM_16000
COG1175 ABC-type sugar transport systems, permease components.
 
 
 0.982
RAM_32720
Hypothetical protein.
  
     0.665
RAM_32875
Hypothetical protein.
  
     0.661
RAM_19345
LamG domain-containing protein receptor.
  
     0.648
PdhR-6
COG2186 Transcriptional regulators.
 
    0.595
RAM_21980
Hypothetical protein; COG2508 Regulator of polyketide synthase expression.
  
     0.589
RAM_41595
Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection; Belongs to the YbaB/EbfC family.
  
     0.573
RAM_18150
Hypothetical protein.
  
     0.565
RAM_22275
Hypothetical protein.
  
     0.561
RAM_22335
Hypothetical protein.
  
     0.558
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.