RAM_16030 protein (Amycolatopsis mediterranei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RAM_16030

COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain. (219 aa)

Predicted Functional Partners:

RAM_16025

0.955

UbiA

0.794

DegS

0.783

RAM_27550

0.776

RAM_28065

0.774

RAM_18055

0.769

RAM_40540

0.750

RAM_04835

0.747

RAM_43410

0.738

RAM_00840

0.705

Your Current Organism:

Amycolatopsis mediterranei

NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DegS	RAM_16030	RAM_24560	RAM_16030	COG4564 Signal transduction histidine kinase.	COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.	0.783
RAM_00840	RAM_16030	RAM_00840	RAM_16030	Two-component system sensor kinase; COG3850 Signal transduction histidine kinase, nitrate/nitrite-specific.	COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.	0.705
RAM_04835	RAM_16030	RAM_04835	RAM_16030	COG4585 Signal transduction histidine kinase.	COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.	0.747
RAM_16025	RAM_16030	RAM_16025	RAM_16030	COG4585 Signal transduction histidine kinase.	COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.	0.955
RAM_16025	UbiA	RAM_16025	RAM_16020	COG4585 Signal transduction histidine kinase.	Homogenitisate phytyltransferase; COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases.	0.837
RAM_16030	DegS	RAM_16030	RAM_24560	COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.	COG4564 Signal transduction histidine kinase.	0.783
RAM_16030	RAM_00840	RAM_16030	RAM_00840	COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.	Two-component system sensor kinase; COG3850 Signal transduction histidine kinase, nitrate/nitrite-specific.	0.705
RAM_16030	RAM_04835	RAM_16030	RAM_04835	COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.	COG4585 Signal transduction histidine kinase.	0.747
RAM_16030	RAM_16025	RAM_16030	RAM_16025	COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.	COG4585 Signal transduction histidine kinase.	0.955
RAM_16030	RAM_18055	RAM_16030	RAM_18055	COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.	COG4585 Signal transduction histidine kinase.	0.769
RAM_16030	RAM_27550	RAM_16030	RAM_27550	COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.	COG4585 Signal transduction histidine kinase.	0.776
RAM_16030	RAM_28065	RAM_16030	RAM_28065	COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.	COG4585 Signal transduction histidine kinase.	0.774
RAM_16030	RAM_40540	RAM_16030	RAM_40540	COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.	COG4585 Signal transduction histidine kinase.	0.750
RAM_16030	RAM_43410	RAM_16030	RAM_43410	COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.	COG4585 Signal transduction histidine kinase.	0.738
RAM_16030	UbiA	RAM_16030	RAM_16020	COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.	Homogenitisate phytyltransferase; COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases.	0.794
RAM_18055	RAM_16030	RAM_18055	RAM_16030	COG4585 Signal transduction histidine kinase.	COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.	0.769
RAM_27550	RAM_16030	RAM_27550	RAM_16030	COG4585 Signal transduction histidine kinase.	COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.	0.776
RAM_28065	RAM_16030	RAM_28065	RAM_16030	COG4585 Signal transduction histidine kinase.	COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.	0.774
RAM_40540	RAM_16030	RAM_40540	RAM_16030	COG4585 Signal transduction histidine kinase.	COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.	0.750
RAM_43410	RAM_16030	RAM_43410	RAM_16030	COG4585 Signal transduction histidine kinase.	COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.	0.738

page 1 of 2

Server load: medium (58%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Textmining

Coexpression

Databases

Fusion

© STRING Consortium 2025

Credits

Access

Info

About