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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_16085ABC transporter substrate-binding protein. (527 aa)    
Predicted Functional Partners:
RAM_19480
COG0411 ABC-type branched-chain amino acid transport systems, ATPase component; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.951
RAM_36755
COG0411 ABC-type branched-chain amino acid transport systems, ATPase component; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.951
RAM_16090
Hypothetical protein; COG0523 Putative GTPases (G3E family).
       0.782
RAM_14430
Metalloprotease.
  
     0.570
RAM_16075
Hypothetical protein.
 
    0.553
RAM_12075
Endoglycosylceramidase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.518
RAM_17365
Extracellular neutral protease.
  
     0.503
RAM_45130
Hypothetical protein.
  
     0.493
RAM_16080
COG1131 ABC-type multidrug transport system, ATPase component.
  
    0.491
RAM_16060
COG0642 Signal transduction histidine kinase.
       0.486
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.