STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_16115Hypothetical protein. (762 aa)    
Predicted Functional Partners:
RAM_16105
COG1695 Predicted transcriptional regulators.
 
     0.949
RAM_16110
COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
 
  
 0.932
RAM_34745
COG1404 Subtilisin-like serine proteases; Belongs to the peptidase S8 family.
  
     0.544
RAM_16100
COG1309 Transcriptional regulator.
       0.483
RAM_41800
Surface protein.
  
     0.464
RAM_00160
Hypothetical protein.
  
     0.420
RAM_04320
Integral membrane protein.
 
     0.418
RAM_08330
PA domain-containing protein.
  
     0.403
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.