STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_16180Hypothetical protein. (187 aa)    
Predicted Functional Partners:
RpoE-23
COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.845
RAM_16170
MFS transporter multidrug efflux transporter; COG0477 Permeases of the major facilitator superfamily.
 
     0.804
RAM_16175
Carboxyvinyl-carboxyphosphonate phosphorylmutase; COG2513 PEP phosphonomutase and related enzymes.
       0.773
RAM_14870
COG1309 Transcriptional regulator.
  
     0.659
RAM_27770
Methyltransferase type 12; COG0500 SAM-dependent methyltransferases.
  
     0.653
RAM_40005
COG2246 Predicted membrane protein.
  
     0.539
RAM_23985
Hypothetical protein; COG3467 Predicted flavin-nucleotide-binding protein.
  
     0.535
RAM_26190
VanZ-like protein; COG4767 Glycopeptide antibiotics resistance protein.
  
     0.534
RAM_44705
Hypothetical protein.
  
     0.508
RAM_23835
Hypothetical protein; COG0262 Dihydrofolate reductase.
  
     0.476
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.