STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_16245Heparinase II/III family protein. (604 aa)    
Predicted Functional Partners:
LacI-6
COG1349 Transcriptional regulators of sugar metabolism.
 
    0.824
RAM_16220
COG4289 Uncharacterized protein conserved in bacteria.
 
     0.608
RAM_27175
COG4280 Predicted membrane protein.
  
     0.584
RAM_16240
ABC transporter substrate-binding protein; COG1653 ABC-type sugar transport system, periplasmic component.
  
    0.558
RAM_29540
Coagulation factor 5/8 type domain protein.
 
     0.555
RAM_16235
COG1175 ABC-type sugar transport systems, permease components.
       0.548
RAM_17345
COG3533 Uncharacterized protein conserved in bacteria.
 
     0.543
RAM_27335
Hypothetical protein.
 
     0.499
RAM_16225
D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein; COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
 
     0.488
RAM_18640
Glycoside hydrolase.
 
     0.466
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.