STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_16280Polysulphide reductase NrfD. (337 aa)    
Predicted Functional Partners:
RAM_16285
COG0437 Fe-S-cluster-containing hydrogenase components 1.
 
  
 0.961
RAM_16290
Formate dehydrogenase alpha subunit, selenocysteine-containing protein; COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
     0.952
RAM_16295
Formate dehydrogenase alpha subunit, selenocysteine-containing protein; COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing.
 
     0.898
RAM_29330
COG0437 Fe-S-cluster-containing hydrogenase components 1.
 
  
 0.834
RAM_29320
Formate dehydrogenase alpha subunit, selenocysteine-containing protein; COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing.
 
  
 0.810
RAM_29325
Formate dehydrogenase alpha subunit, selenocysteine-containing protein; COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
  
 0.810
SelB
COG3276 Selenocysteine-specific translation elongation factor.
 
   
 0.779
selA
Selenocysteine synthase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
 
   
 0.696
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP.
 
   
 0.636
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.