STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_16345COG0474 Cation transport ATPase. (1392 aa)    
Predicted Functional Partners:
RAM_31455
COG5126 Ca2+-binding protein (EF-Hand superfamily).
   
 
 0.707
MgtC
MgtC-like protein; COG1285 Uncharacterized membrane protein.
 
 
 0.656
RAM_33945
Hypothetical protein.
  
 
 0.549
DnaK-2
Molecular chaperone DnaK; COG4249 Uncharacterized protein containing caspase domain; Belongs to the heat shock protein 70 family.
 
 
 0.546
RAM_00815
COG2119 Predicted membrane protein.
 
 
 
 0.529
OtsB
Trehalose-phosphatase/glycoside hydrolase; COG1877 Trehalose-6-phosphatase.
  
 
 0.515
RAM_16340
COG1680 Beta-lactamase class C and other penicillin binding proteins.
     
 0.514
RAM_00240
COG4152 ABC-type uncharacterized transport system, ATPase component.
 
 0.503
RAM_13455
Hypothetical protein.
   
    0.501
RAM_13460
COG3220 Uncharacterized protein conserved in bacteria.
   
    0.501
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.