STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_16385COG0477 Permeases of the major facilitator superfamily. (398 aa)    
Predicted Functional Partners:
RAM_23500
COG3979 Uncharacterized protein contain chitin-binding domain type 3.
  
     0.570
RAM_16380
COG0640 Predicted transcriptional regulators.
       0.540
RAM_35490
COG1653 ABC-type sugar transport system, periplasmic component.
  
     0.461
RAM_08330
PA domain-containing protein.
  
     0.441
RAM_14950
COG1404 Subtilisin-like serine proteases; Belongs to the peptidase S8 family.
  
     0.412
RAM_05540
CAAX amino terminal protease; COG1266 Predicted metal-dependent membrane protease.
  
     0.400
RAM_19410
Hypothetical protein.
  
     0.400
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.