STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_16395Lycopene cyclase CrtYc. (108 aa)    
Predicted Functional Partners:
RAM_16390
Lycopene cyclase CrtYd.
 
   
 0.953
RAM_20750
Lycopene cyclase.
 
   
 0.804
CrtU
Isorenieratene synthase.
 
     0.640
RAM_41605
Hypothetical protein.
  
     0.601
RAM_20810
Rieske (2Fe-2S) domain-containing protein; COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit.
 
     0.592
CrtI-2
COG1233 Phytoene dehydrogenase and related proteins.
 
   
 0.453
RAM_16400
Hypothetical protein.
       0.443
RAM_16405
COG1846 Transcriptional regulators.
       0.443
CrtB-2
COG1562 Phytoene/squalene synthetase.
 
   
 0.440
CrtI
COG1233 Phytoene dehydrogenase and related proteins.
 
   
 0.408
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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