STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_16455COG3938 Proline racemase; Belongs to the proline racemase family. (333 aa)    
Predicted Functional Partners:
Ocd-2
COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog.
 
  
 0.971
RAM_16440
Hypothetical protein; COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases.
 
     0.955
RAM_16435
FAD-dependent oxidoreductase; COG0665 Glycine/D-amino acid oxidases (deaminating).
 
  
 0.953
RAM_16445
FAD-dependent pyridine nucleotide-disulfide oxidoreductase; COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases.
 
     0.953
DapA
COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; Belongs to the DapA family.
 
  
 0.951
Ocd-4
COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog.
 
  
 0.924
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
    
 0.921
RAM_13625
COG0665 Glycine/D-amino acid oxidases (deaminating).
  
 
 0.909
RAM_38560
COG0289 Dihydrodipicolinate reductase.
     
 0.902
Pip
Proline iminopeptidase; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily); Belongs to the peptidase S33 family.
     
  0.900
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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