STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_16710Xylosidase/glycosyl hydrolase; COG3507 Beta-xylosidase. (661 aa)    
Predicted Functional Partners:
RAM_16715
Hypothetical protein; COG3507 Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
   
 0.973
AbfA-2
alpha-N-arabinofuranosidase; COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).
   
 0.883
AbfA-10
alpha-N-arabinofuranosidase.
   
 0.814
RAM_16765
Hypothetical protein; COG3509 Poly(3-hydroxybutyrate) depolymerase.
 
     0.785
RAM_20325
COG3533 Uncharacterized protein conserved in bacteria.
 
   
 0.780
RAM_20315
Hypothetical protein; COG3509 Poly(3-hydroxybutyrate) depolymerase.
 
     0.767
AbfA-12
alpha-N-arabinofuranosidase.
   
 0.764
RAM_17360
COG3533 Uncharacterized protein conserved in bacteria.
 
   
 0.757
RAM_16735
Lipolytic protein G-D-S-L family; COG2755 Lysophospholipase L1 and related esterases.
 
   
 0.749
RAM_19085
SGNH hydrolase; COG2755 Lysophospholipase L1 and related esterases.
   
 0.741
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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