STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_16735Lipolytic protein G-D-S-L family; COG2755 Lysophospholipase L1 and related esterases. (361 aa)    
Predicted Functional Partners:
RAM_16730
Glycoside hydrolase; Belongs to the glycosyl hydrolase 12 (cellulase H) family.
 
   0.784
RAM_16765
Hypothetical protein; COG3509 Poly(3-hydroxybutyrate) depolymerase.
 
     0.780
RAM_16710
Xylosidase/glycosyl hydrolase; COG3507 Beta-xylosidase.
 
   
 0.749
RAM_26415
Hydrolase.
 
 
 0.748
RAM_16740
COG3669 Alpha-L-fucosidase.
 
     0.746
RAM_20315
Hypothetical protein; COG3509 Poly(3-hydroxybutyrate) depolymerase.
 
     0.742
AbfA-4
alpha-L-arabinofuranosidase.
 
    
0.714
XynA
Endo-1,4-beta-xylanase; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
 
   
 0.693
RAM_16750
Hypothetical protein.
 
    
0.683
RAM_38340
PHB depolymerase family esterase; COG3509 Poly(3-hydroxybutyrate) depolymerase.
     0.658
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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