STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AbfA-4alpha-L-arabinofuranosidase. (491 aa)    
Predicted Functional Partners:
RAM_16740
COG3669 Alpha-L-fucosidase.
 
     0.863
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
     
  0.800
AraA
Putative L-arabinose isomerase protein; Catalyzes the conversion of L-arabinose to L-ribulose.
     
  0.800
RAM_16750
Hypothetical protein.
 
   
0.785
RAM_16765
Hypothetical protein; COG3509 Poly(3-hydroxybutyrate) depolymerase.
 
     0.758
RAM_20040
Hypothetical protein; COG3664 Beta-xylosidase.
  
     0.756
RAM_16780
Hypothetical protein; COG3664 Beta-xylosidase.
  
     0.754
RAM_26415
Hydrolase.
 
     0.725
RAM_17690
Hypothetical protein.
 
   
 0.719
RAM_16735
Lipolytic protein G-D-S-L family; COG2755 Lysophospholipase L1 and related esterases.
 
    
0.714
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.