STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AbfA-5alpha-L-arabinofuranosidase. (478 aa)    
Predicted Functional Partners:
RAM_16765
Hypothetical protein; COG3509 Poly(3-hydroxybutyrate) depolymerase.
 
     0.862
RAM_16780
Hypothetical protein; COG3664 Beta-xylosidase.
 
     0.781
RAM_15635
Hypothetical protein; COG3408 Glycogen debranching enzyme.
  
     0.729
RAM_26415
Hydrolase.
 
     0.722
UbiA
Homogenitisate phytyltransferase; COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases.
  
     0.718
RAM_16740
COG3669 Alpha-L-fucosidase.
 
     0.695
RAM_20315
Hypothetical protein; COG3509 Poly(3-hydroxybutyrate) depolymerase.
 
     0.685
RAM_11435
COG5520 O-Glycosyl hydrolase.
  
     0.672
RAM_28565
Hypothetical protein.
  
     0.643
RAM_16730
Glycoside hydrolase; Belongs to the glycosyl hydrolase 12 (cellulase H) family.
 
     0.614
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.