STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_16780Hypothetical protein; COG3664 Beta-xylosidase. (614 aa)    
Predicted Functional Partners:
RAM_38105
Beta-mannosidase; COG2755 Lysophospholipase L1 and related esterases.
 
 
 
 0.782
AbfA-5
alpha-L-arabinofuranosidase.
 
     0.781
RAM_15635
Hypothetical protein; COG3408 Glycogen debranching enzyme.
 
     0.778
AbfA-7
alpha-N-arabinofuranosidase.
  
     0.757
AbfA-8
alpha-N-arabinofuranosidase.
  
     0.755
AbfA-4
alpha-L-arabinofuranosidase.
  
     0.754
RAM_16740
COG3669 Alpha-L-fucosidase.
  
    0.752
RAM_17945
Hypothetical protein.
 
 
 0.750
AbfA-3
alpha-N-arabinofuranosidase.
  
     0.744
AbfA-6
alpha-N-arabinofuranosidase.
  
     0.739
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.