STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_16830COG0642 Signal transduction histidine kinase. (1096 aa)    
Predicted Functional Partners:
RAM_16835
Hypothetical protein.
 
     0.946
RAM_07265
ATP/GTP-binding protein; COG2229 Predicted GTPase.
 
 
 0.893
RAM_12680
ATP/GTP-binding protein; COG2229 Predicted GTPase.
 
 
 0.893
RAM_32830
ATP/GTP-binding protein; COG2229 Predicted GTPase.
 
 
 0.893
RAM_38370
GTPase; COG2229 Predicted GTPase.
 
 
 0.893
RAM_39445
ATP/GTP-binding protein; COG2229 Predicted GTPase.
 
 
 0.893
RAM_43775
ATP/GTP-binding protein; COG2229 Predicted GTPase.
 
 
 0.893
RAM_26835
ATP/GTP-binding protein; COG2229 Predicted GTPase.
 
 
 0.892
RAM_45765
ATP/GTP-binding protein; COG2229 Predicted GTPase.
 
 
 0.891
RAM_16840
COG3300 MHYT domain (predicted integral membrane sensor domain).
 
     0.803
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.